Utility of GeneXpert MTB/RIF in the Diagnosis of Tuberculosis Compared to Sputum Smear Microscopy
DOI:
https://doi.org/10.29166/rfcmq.v49i2.6638Keywords:
tuberculosis., mycobacterium tuberculosis, multidrug-resistant tuberculosis, molecular biology, molecular diagnostic techniquesAbstract
Introduction: Implementing an appropriate and efficient diagnostic method is crucial for the early detection of tuberculosis. This not only allows for effective control
of the disease to prevent its transmission and progression to more severe stages
but also prevents the development of drug resistance in patients.
Objective: To evaluate the utility of the GeneXpert MTB/RIF molecular test in diagnosing Mycobacterium tuberculosis complex, compared to sputum smear microscopy, using culture as the reference.
Material and Methods: A descriptive, observational, and non-experimental
cross-sectional study was conducted, including 253 samples from patients of both
sexes and various age ranges, which were assessed using sputum smear microscopy, GeneXpert MTB/RIF, and culture. The study focused on samples processed
at a Quito´s Public Hospital during the period from January 2021 to May 2022.
Results: The GeneXpert MTB/RIF molecular test showed a sensitivity of 94.7%
and a specificity of 93.9% for the diagnosis of Mycobacterium tuberculosis complex. Additionally, a case of resistance to rifampicin was identified.
Conclusion: This study confirms the effectiveness of the GeneXpert MTB/RIF molecular test over sputum smear microscopy for the timely diagnosis of tuberculosis.
However, it is essential to consider the diverse conditions of the samples and patients to optimize diagnostic accuracy.
Downloads
Metrics
References
World Health Organization. Global tuberculosis report 2023. Geneva: World Health Organization [Internet]. 2023 [Cited Mar 1, 2024]. Available from: https://iris.who.int/.
Organización Panamericana de la Salud, Organización Mundial de la Salud. Tuberculosis [Internet]. 2023 [Cited Mar 1,2024]. Available from: https://www.paho.org/es/temas/tuberculosis.
Ministerio de Salud Pública. Indicadores priorizados de la Estrategia Fin de la TB [Internet]. 2023 [Cited Mar 1, 2024]. Available from: https://www.salud.gob.ec/wp-content/uploads/2023/10/Reporte-de-TB-2019-2022-vd-signed-signed-signed-signed-signed.pdf.
Farga V, Peña C, Arias F, Herrera T. Nuevos métodos para el diagnóstico de la tuberculosis. Rev Chil Enferm Respir [Internet]. 2016[Cited Mar 1, 2024];32(4):255–6. Available from: https://www.scielo.cl/pdf/rcher/v32n4/art07.pdf
Vizcaíno-Salazar GJ. Importance of calculation of sensitivity, specificity, and other statistical parameters in the use of clinical and laboratory diagnostic tests[Internet]. 2017 [Cited 2023 Nov 29];23(3):365–8. Available from: https://docs.bvsalud.org/biblioref/2018/05/883697/importancia-calculo-sensibilidad-y-especifidad.pdf.
Oras-Conhu H. Manual para el diagnóstico bacteriológico de la tuberculosis. Parte Manual de actualización de la baciloscopía Lima [Internet]. 2018 [Cited Mar 1, 2024]. Available from: https://www.paho.org/es/documentos/manual-para-diagnostico-bacteriologico-tuberculosis-parte-1-manual-actualizacion
Lacayo AC, Rodríguez G, Olivia Aguilar Z, Cornejo CV, María I, Rodríguez. Validez diagnóstica del GeneXpert para Mycobacterium tuberculosis y prueba de resistencia a rifampicina. Alerta [Internet]. 2021 [Cited Oct 1, 2023];4(3):176–9. Available from: DOI: 10.5377/alerta.v4i3.8829.
Ortiz J, Sotomayor F, Ramirez R. Validation and implementation of GeneXpert MTB/RIF for diagnosis of Tuberculosis in Ecuador. Lancet [Internet]. 2019[Cited Oct 1, 2023];47:29–37. Available from: https://www.redalyc.org/journal/3730/373061540006/html/#:~:text=El%20an%C3%A1lisis%20de%20los%20resultados,GeneXpert%20considerados%20falsos%20negativos%20resultaron
Amaya G, Contrera M, Arrieta F, Montano A, Pírez C, Amaya G, et al. Rendimiento del GeneXpert en el diagnóstico de tuberculosis pulmonar y extrapulmonar en la edad pediátrica. Arch Pediatr Urug [Internet]. 2020 [Cited Mar 1, 2023];91:12–23. Available from: http://www.scielo.edu.uy/scielo.php?script=sci_arttext&pid=S1688-12492020000800012&lng=es&nrm=iso&tlng=es.
Opota O, Mazza‐Stalder J, Greub G, Jaton K. The rapid molecular test Xpert MTB/RIF ultra: towards improved tuberculosis diagnosis and rifampicin resistance detection. Clin Microbiol Infect [Internet]. 2019 [Cited May 7, 2024]. Available from: https://doi.org/10.1016/j.cmi.2019.03.021
Sharma R, Garasiya K, Meena R. Detection of pulmonary and extra-pulmonary tuberculosis from clinical samples with rifampicin (RIF) resistance by Gene-Xpert MTB/RIF assay at a tertiary care teaching hospital, Udaipur, Rajasthan. Indian J Appl Res[Internet]. 2022 [Cited May 7, 2024]. Available from: https://doi.org/10.36106/ijar/8503959.
Zhurilo A, Barbova A, Cherednik YA, Trofimova PS, Mironchenko SV, Pavlova OV, Chernov AV, Sládková L. Comparison of GeneXpert MTB/RIF and genotype systems with MTBDRplus strips for detection of mutations that are associated with M. tuberculosis resistance to rifampicin in tuberculosis. Ukrainian Pulmonology Journal [Internet]. 2022 [Cited May 7, 2024]. Available from: https://doi.org/10.31215/2306-4927-2022-30-4-34-41
Peña MC, Escobar SN. Tuberculosis con resistencia a rifampicina en Chile. Revista Chi Enfer Resp [Internet]. 2021 [Cited Oct 16, 2023];37(1):74–81. Available from: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S071773482021000100074&lng=es&nrm=iso&tlng=es.
Zifodya JS, Kreniske JS, Schiller I, Kohli M, Dendukuri N, Schumacher SG, et al. Xpert Ultra versus Xpert MTB/RIF for pulmonary tuberculosis and rifampicin resistance in adults with presumptive pulmonary tuberculosis. Cochrane Database of Systematic Reviews [Internet]. 2021 [Cited Oct 16, 2023];2021(2). Available from: https://www.cochrane.org/es/CD009593/INFECTN_xpert-ultra-en-comparacion-con-xpert-mtbrif-para-el-diagnostico-de-la-tuberculosis-pulmonar-y-la.
Xie C, Hu X, Liu Y, Shu C. Performance Comparison of GeneXpert MTB/RIF, Gene Chip Technology, and Modified Roche Culture Method in Detecting Mycobacterium tuberculosis and Drug Susceptibility in Sputum. Contrast Media Mol Imaging[Internet]. 2022 [Cited May 7, 2024]. Available from: https://doi.org/10.1155/2022/2995464
Mechal Y, Benaissa E, El Mrimar N, Benlahlou Y, Bssaibis F, Zegmout A, Chadli M, Malik Y, Touil N, Abid A, Maleb A, Elouennass M. Evaluation of GeneXpert MTB/RIF system performances in the diagnosis of extrapulmonary tuberculosis. BMC Infect Dis [Internet]. 2019 [Cited May 7, 2024]. Available from: https://doi.org/10.1186/s12879-019-4687-7.
Pandey S, Congdon J, McInnes B, Pop A, Coulter C. Evaluation of the GeneXpert MTB/RIF assay on extrapulmonary and respiratory samples other than sputum: a low burden country experience. Pathology[Internet]. 2017 Cited May 7, 2024];49(1):70-74. Available from: https://doi.org/10.1016/j.pathol.2016.10.004
Rojas C, Polanco EC, Vivar MC, Aguayo W, Molina G, Gutierrez BM, Cobo MM. Abdominal tuberculosis in Ecuador, a problem that is still not solved. J Clin Tuberc Other Mycobacterial Dis [Internet]. 2020[Cited May 7, 2024];20. Available from: https://doi.org/10.1016/j.jctube.2020.100172
Giacomazzi C, Cespedes-Alvarado CG, Losada-Cabruja EA, McDermott J, Rojas-Andrade CA, Varnier O. Rapid diagnosis of tuberculosis and multidrug resistance with the microscopic observation drug susceptibility assay in Ecuador. Int J Tuberc Lung Dis[Internet]. 2010 [Cited May 7, 2024];14(6):786-8. Available from: PMID: 20487621.
Morey LG, Mejía PM, Granda JC, Muñoz K, Fernández J, García E, Andrade D, Licona C, Berná L. A precision overview of genomic resistance screening in Ecuadorian isolates. of Mycobacterium tuberculosis using web-based bioinformatics tools. PLoS ONE [Internet]. 2023[Cited May 7, 2024];18. Available from: https://doi.org/10.1371/journal.pone.0294670.
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2024 Jessica Carolina Chanataxi Lugmania, Danny Asimbaya Alvarado

This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.